Subject Biology Biotechnology

Question

Smart program: Q8WWW8
Pfam : Q8WWW8
CDD: Q8WWW8
1 msagdavctg wlvkspperk lqryawrkrw fvlrrgrmsg npdvleyyrn khsskpirvi
       61 dlsecavwkh vgpsfvrkef qnnfvfivkt tsrtfylvak teqemqvwvh sisqvcnlgh
      121 ledgadsmes lsytpsslqp ssasslltah aassslprdd pntnavatee trsesellfl
      181 pdylvlsnce tgrlhhtslp trcdswsnsd rsleqasfdd vfvdclqplp sshlvhpsch
      241 gsgaqevpss rpqaaliwsr eingpprdhl ssspllessl sstiqvdknq gslpcgakel
      301 dimsntpppr ppkpshlser rqeewsthsg skkpectlvp rrislsgldn mrtwkadveg
      361 qslrhrdkrl slnlpcrfsp myptasasie dsyvpmspqa gasglgphcs pddyipmnsg
      421 sissplpelp anlepppvnr dlkpqrksrp ppldlrnlsi irehasltrt rtvpcsrtsf
      481 lsperngins arffanpvsr edeesyieme ehrtasslss galtwtkkfs ldylaldfns
      541 aspapmqqkl llseeqrvdy vqvdeqktqa lqstkqewtd erqskv
//

Prosite : Q8WWW8
You might need to use its sequence:
1 msagdavctg wlvkspperk lqryawrkrw fvlrrgrmsg npdvleyyrn khsskpirvi
       61 dlsecavwkh vgpsfvrkef qnnfvfivkt tsrtfylvak teqemqvwvh sisqvcnlgh
      121 ledgadsmes lsytpsslqp ssasslltah aassslprdd pntnavatee trsesellfl
      181 pdylvlsnce tgrlhhtslp trcdswsnsd rsleqasfdd vfvdclqplp sshlvhpsch
      241 gsgaqevpss rpqaaliwsr eingpprdhl ssspllessl sstiqvdknq gslpcgakel
      301 dimsntpppr ppkpshlser rqeewsthsg skkpectlvp rrislsgldn mrtwkadveg
      361 qslrhrdkrl slnlpcrfsp myptasasie dsyvpmspqa gasglgphcs pddyipmnsg
      421 sissplpelp anlepppvnr dlkpqrksrp ppldlrnlsi irehasltrt rtvpcsrtsf
      481 lsperngins arffanpvsr edeesyieme ehrtasslss galtwtkkfs ldylaldfns
      541 aspapmqqkl llseeqrvdy vqvdeqktqa lqstkqewtd erqskv
//

Interpro Q8WWW8
Part A
Do a domain architecture analysis on your assigned sequence using all programs posted in resources.
1. Show results from each program.
2. Generate your own consensus for the domain architecture based on this analysis.
3. Generate a final cartoon of the domain architecture of your protein
4. Discuss any unresolved issues or ambiguities remaining after completing the analysis.
Sample analyses in 2 different formats is also attached from previous assignments. Note: These only include the results/analysis, not the discussion, citation etc.
Part B
Write a formal methods section for your assignment. Example of how methods are written for computational biology papers was attached in the previous assignment and another example is attached to this assignment

Solution Preview

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Domain Architecture Analysis on Q8www8 (Human Gab3 Protein)

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